STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2753Probable ipr002198 short-chain dehydrogenase/reductase oxidoreductase protein. (265 aa)    
Predicted Functional Partners:
RSp1434
Putative acyl-coa synthetases(amp-forming) protein.
 
  
   0.905
dgoAa
Putative 2-dehydro-3-deoxyphosphogalactonate aldolase protein.
 
   
 0.878
dgoAb
Putative galactonate dehydratase protein; Catalyzes the dehydration of D-galactonate to 2-keto-3-deoxy- D-galactonate.
 
   
 0.808
RSc2755
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
    0.775
RSc2754
Probable ipr011013 galactose mutarotase-like protein.
       0.773
araH
Probable l-arabinose transmembrane abc transporter protein; Belongs to the binding-protein-dependent transport system permease family.
       0.752
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.749
araG
Probable l-arabinose atp-binding abc transporter protein; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family.
       0.746
araF
Probable l-arabinose-binding periplasmic (pbp) abc transporter protein; Belongs to the bacterial solute-binding protein 2 family.
 
     0.709
RSc2434
Putative reductase oxidoreductase protein.
 
 
 0.708
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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