STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2760Probable ipr001702 outer membrane (porin) signal peptide protein. (353 aa)    
Predicted Functional Partners:
RSc1181
Probable cog1807, 4-amino-4-deoxy-l-arabinose transferase and related glycosyltransferases of pmt family transmembrane protein.
  
     0.700
RSc2108
Probable porin signal peptide protein.
  
  
 
0.673
RSp0051
Probable porin signal peptide protein.
  
  
 
0.672
RSp0337
Probable porin precursor transmembrane protein.
  
  
 
0.672
RSc2855
Putative outer membrane porin signal peptide protein.
  
  
 
0.671
RSc1082
Probable outer membrane porin protein.
  
  
 
0.666
RSc2933
Putative porin signal peptide protein.
  
  
 
0.666
dgoK
Probable 2-dehydro-3-deoxygalactonokinase protein.
       0.664
RSp1399
Probable porin signal peptide protein.
  
  
 
0.664
RSp1594
Probable porin signal peptide protein.
  
  
 
0.663
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.