STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
popWProbable harpin protein with pectate lyase domain. (380 aa)    
Predicted Functional Partners:
cbhA
Probable exoglucanase a (1,4-beta-cellobiosidase) protein; Belongs to the glycosyl hydrolase family 6.
 
 
 0.813
RSc1501
Polyphenol oxidase oxidoreductase protein.
  
   
 0.697
RSc0337
Polyphenol oxidase with tyrosine hydroxylase activity oxidoreductase protein.
  
   
 0.658
hrpW
Hrpw transmembrane protein.
   
  
 0.651
RSp1419
Putative peptide synthase protein.
  
     0.574
hrpH
Hrph protein.
      
 0.548
hrpZ
Probable hrpy-related protein.
      
 0.547
RSc0818
Putative endoglucanase c-terminal domain harboring protein.
  
     0.546
egl
Endoglucanase precursor (endo-1,4-beta-glucanase)(cellulase) protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
 
 0.536
pme
Pectinesterase precursor (pectin methylesterase) (pe). transmembrane protein; Involved in maceration and soft-rotting of plant tissue. Belongs to the pectinesterase family.
  
   
 0.513
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.