STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2792Putative outer membrane lipoprotein transmembrane. (155 aa)    
Predicted Functional Partners:
RSc2791
Probable carbohydrate kinase, pfkb protein.
       0.773
RSp0506
Putative outer-membrane lipoprotein.
  
     0.741
RSc0899
Putative outer membrane lipoprotein transmembrane.
  
     0.737
tpx
Probable thiol peroxidase oxidoreductase protein; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Tpx subfamily.
  
  
 0.610
pagL
Probable lipid a deacylase signal peptide protein; Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety; Belongs to the PagL family.
  
  
 0.556
RSc0753
Probable transmembrane protein.
  
    0.546
RSc2789
Probable transmembrane protein.
 
     0.542
RSc0752
Probable transmembrane protein.
  
    0.519
hemY
Putative protein porphyrin biosynthesis.
  
     0.463
prmA
Probable ribosomal protein l11 methyltransferase (l11 mtase); Methylates ribosomal protein L11.; Belongs to the methyltransferase superfamily. PrmA family.
 
     0.451
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.