STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2792Putative outer membrane lipoprotein transmembrane. (155 aa)    
Predicted Functional Partners:
RSc2791
Probable carbohydrate kinase, pfkb protein.
       0.771
RSp0506
Putative outer-membrane lipoprotein.
  
     0.741
RSc0899
Putative outer membrane lipoprotein transmembrane.
  
     0.737
tpx
Probable thiol peroxidase oxidoreductase protein; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Tpx subfamily.
  
  
 0.633
RSc2789
Probable transmembrane protein.
 
     0.547
RSc0753
Probable transmembrane protein.
  
    0.542
pagL
Probable lipid a deacylase signal peptide protein; Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety; Belongs to the PagL family.
  
  
 0.537
RSc0752
Probable transmembrane protein.
  
     0.514
hemY
Putative protein porphyrin biosynthesis.
  
     0.463
prmA
Probable ribosomal protein l11 methyltransferase (l11 mtase); Methylates ribosomal protein L11.; Belongs to the methyltransferase superfamily. PrmA family.
 
     0.455
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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