STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
RSc2814Putative prolyl 4-hydroxylase alpha subunit homologue oxidoreductase protein. (289 aa)    
Predicted Functional Partners:
proC
Probable oxidoreductase pyrroline-5-carboxylate reductase signal peptide protein; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
     
 0.903
putA
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
   
 
  0.901
RSc3352
Putative ornithine cyclodeaminase protein.
     
  0.900
RSp0196
Probable prolyl aminopeptidase protein; Belongs to the peptidase S33 family.
     
  0.900
RSp0483
Probable ornithine cyclodeaminase protein.
     
  0.900
RSp1422
Putative peptide synthetase protein.
   
    0.754
RSp0414
Probable ferric siderophore receptor protein.
  
  
 0.717
RSp1062
Probable ferrisiderophore receptor protein.
  
  
 0.717
RSc2813
Putative multiple antibiotic resistance (marc)-relateds transmembrane protein.
       0.678
RSc2815
Putative transglycosylase signal peptide protein.
  
    0.592
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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