STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RSc2815Putative transglycosylase signal peptide protein. (245 aa)    
Predicted Functional Partners:
proS
Probable prolyl-trna synthetase protein; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing [...]
       0.822
RSc0069
Probable signal peptide protein.
 
   
 0.698
pilO
Probable fimbrial type-4 assembly membrane transmembrane protein.
  
     0.686
pilP
Probable fimbrial type-4 assembly lipoprotein.
  
     0.677
RSc1259
Putative signal peptide protein.
 
     0.655
pilN
Probable fimbrial type-4 assembly membrane transmembrane protein.
  
     0.654
nudH
Probable (di)nucleoside polyphosphate hydrolase protein; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily.
   
   0.648
pilZ
Putative type 4 fimbrial biogenesis protein.
  
     0.636
pilM
Probable fimbrial type-4 assembly protein.
  
     0.631
pilQ
Probable fimbrial type-4 assembly signal peptide protein.
  
     0.607
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.