STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2896Putative lytic transglycosylase, catalytic protein. (170 aa)    
Predicted Functional Partners:
RSc2895
Putative signal peptide protein.
       0.709
RSc2894
Hypothetical transmembrane protein.
       0.695
RSc2108
Probable porin signal peptide protein.
  
     0.635
hrcC
Hrp conserved hrcc transmembrane protein; Component of the type III secretion system (T3SS), also called injectisome, which is used to inject bacterial effector proteins into eukaryotic host cells. Forms a ring-shaped multimeric structure with an apparent central pore in the outer membrane.
 
  
 0.618
RSp0051
Probable porin signal peptide protein.
  
     0.606
RSc2765
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.490
slt
Probable soluble lytic murein transglycosylase precursor transmembrane protein.
  
   
 0.461
hrcJ
Hrp conserved lipoprotein hrcj transmembrane.
 
  
 0.459
RSc1082
Probable outer membrane porin protein.
  
     0.446
dsbC
Probable thiol:disulfide interchange protein; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily.
 
     0.422
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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