STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
opgGPutative glucans biosynthesis g precursor. signal peptide protein; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs). (504 aa)    
Predicted Functional Partners:
opgH
Probable glucans biosynthesis glucosyltransferase h. transmembrane protein; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs).
  
 0.995
clpA
Probable atp-dependent protease (atp-binding specificity subunit) protein; Belongs to the ClpA/ClpB family.
      
 0.545
trxB
Probable thioredoxin reductase oxidoreductase protein.
   
  
 0.520
RSc2910
Probable signal peptide protein.
       0.457
tatC
Putative sec-independent translocase protein tatc transmembrane; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.
   
 
 0.430
tatB
Probable sec-independent protein translocase protein tatb homolog; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.
    
   0.410
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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