STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2918Putative extracytoplasmic function sigma factor (iron-regulated) transcription regulator protein; Belongs to the sigma-70 factor family. ECF subfamily. (174 aa)    
Predicted Functional Partners:
RSc2919
Putative iron transport-sensory transduction transmembrane protein.
 
 
 0.985
RSc2920
Putative hydroxamate-type ferrisiderophore receptor signal peptide protein.
 
  
 0.896
prhR
3-compartiment signal transduction system, component prhr transmembrane protein.
 
 
 0.826
RSp0100
Putative ferrisiderophore receptor protein.
  
  
 0.783
rseA
Putative transmembrane sigma-e factor negative regulatory transcription regulator protein.
  
 
 0.777
prhI
3-compartiment signal transduction system, sigma factor prhi transcription regulator protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.771
RSp0419
Probable siderophore synthetase component protein.
   
  
 0.650
RSc0421
Putative multidrug-efflux transporter transmembrane protein.
   
  
 0.647
RSc1806
Probable polyketide synthase protein.
  
  
 0.626
RSp0422
Probable siderophore synthetase component protein.
   
  
 0.624
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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