STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
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[Homology]
Score
RSc2919Putative iron transport-sensory transduction transmembrane protein. (274 aa)    
Predicted Functional Partners:
RSc2918
Putative extracytoplasmic function sigma factor (iron-regulated) transcription regulator protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.986
prhR
3-compartiment signal transduction system, component prhr transmembrane protein.
  
  
  0.975
RSc2920
Putative hydroxamate-type ferrisiderophore receptor signal peptide protein.
 
 
 0.955
RSp0100
Putative ferrisiderophore receptor protein.
 
  
 0.880
RSp0415
Probable extracytoplasmic function sigma factor transcription regulator protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.850
prhI
3-compartiment signal transduction system, sigma factor prhi transcription regulator protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.849
RSc0800
Putative ferrisiderophore receptor signal peptide protein.
 
 
 0.831
prhA
Outer membrane receptor prha signal peptide protein.
 
 
 0.796
RSc1807
Putative siderophore receptor protein.
 
  
 0.747
RSc2729
Putative ferrichrome-iron receptor protein.
 
  
 0.746
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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