STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2932Probable htra-like serine protease signal peptide protein; Belongs to the peptidase S1C family. (403 aa)    
Predicted Functional Partners:
rseA
Putative transmembrane sigma-e factor negative regulatory transcription regulator protein.
  
 
 0.722
glpK
Probable glycerol kinase (atp:glycerol 3-phosphotransferase)(glycerokinase) (gk) protein; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
 0.659
RSc2931
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
    0.619
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.579
RSp1215
Probable pseudogene (truncated type III effector protein with ankyrin repeats).
  
 0.490
RSc1806
Probable polyketide synthase protein.
  
 0.465
RSc0257
Putative type III effector protein with ankyrin repeats.
  
 0.463
pnp
Probable polyribonucleotide nucleotidyltransferase protein; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
  
 0.463
rpsF
Probable 30s ribosomal protein s6; Binds together with S18 to 16S ribosomal RNA.
   
 
 0.462
rpsP
Probable 30s ribosomal protein s16; Belongs to the bacterial ribosomal protein bS16 family.
 
 
 0.449
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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