STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2937Putative periplasmic iron-binding signal peptide protein. (365 aa)    
Predicted Functional Partners:
RSc2938
Putative transmembrane abc transporter protein.
 
 
 0.993
RSc2939
Probable atp-binding abc transporter protein.
 
 
 0.975
RSc1735
Probable two-component transmembrane sensor kinase transcription regulator protein.
     0.964
RSc2936
Putative transmembrane sensor kinase transcription regulator protein.
     0.964
RSc2934
Probable bacterial extracellular solute-binding, family 1; abc transporter protein.
 
  
 
0.939
RSc0549
Probable transmembrane sensor histidine kinase transcription regulator protein.
     0.911
RSp1553
Probable transmembrane two-component sensor kinase transcription regulator protein.
     0.886
RSc1351
Putative transmembrane sensor histidine kinase transcription regulator protein.
   
   0.597
RSc2935
Putative response regulator transcription regulator protein.
 
     0.576
RSc3403
Probable two-component sensor kinase transcription regulator protein.
     0.492
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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