STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2939Probable atp-binding abc transporter protein. (358 aa)    
Predicted Functional Partners:
RSc2938
Putative transmembrane abc transporter protein.
 
 0.994
RSc2937
Putative periplasmic iron-binding signal peptide protein.
 
 
 0.977
RSc2934
Probable bacterial extracellular solute-binding, family 1; abc transporter protein.
 
 
 0.954
dppD1
Probable oligopeptide atp-binding abc transporter protein; Belongs to the ABC transporter superfamily.
 
    
0.904
RSc1732
Putative binding-protein-dependent transport systems inner membrane component abc transporter.
 
 0.806
RSc1731
Probable transmembrane abc transporter protein.
  
 0.788
nosF
Probable abc-type copper transport system, atpase component abc transporter protein.
 
    
0.742
RSp1144
Probable abc-type molybdate transport system, permease component abc transporter protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
  
 0.718
RSc1733
Probable bacterial extracellular solute-binding, family 1; signal peptide protein.
 
  
 0.717
RSc0165
Probable abc-type multidrug transport system, permease component abc transporter protein.
 
 
    0.702
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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