STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2955Putative abc-type multidrug transport system, permease component abc transporter protein. (262 aa)    
Predicted Functional Partners:
RSc2956
Probable atp-binding abc transporter protein.
  
 0.979
RSc2954
Probable transcription regulator protein; Belongs to the BolA/IbaG family.
 
    0.705
nodI
Probable atp-binding abc transporter protein; Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4- linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system.
  
 0.595
RSc2961
Putative abc-type transport system involved in resistance to organic solvents, permease component abc transporter protein.
    
  0.531
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
       0.515
RSc2957
Hypothetical signal peptide protein.
       0.513
RSc3402
Probable transmembrane protein.
  
  
 0.508
nosF
Probable abc-type copper transport system, atpase component abc transporter protein.
 
  
 0.485
RSc0164
Probable atp-binding abc transporter protein.
 
  
 0.481
RSc2958
Probable signal peptide protein.
       0.471
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.