STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2959Putative vacj-like lipoprotein; transmembrane. (269 aa)    
Predicted Functional Partners:
RSc2960
Probable signal peptide protein.
 
   
 0.963
RSc2958
Probable signal peptide protein.
 
 
 
 0.942
RSc2961
Putative abc-type transport system involved in resistance to organic solvents, permease component abc transporter protein.
 
   
 0.868
RSc2962
Probable atp-binding abc transporter protein.
 
   
 0.826
RSc2957
Hypothetical signal peptide protein.
     
 0.579
comL
Probable dna uptake lipoprotein transmembrane; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
  
 0.542
gltB
Probable glutamate synthase (large subunit) oxidoreductase protein.
       0.493
RSc2956
Probable atp-binding abc transporter protein.
     
 0.426
RSc2955
Putative abc-type multidrug transport system, permease component abc transporter protein.
     
 0.417
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.