STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2963Hypothetical uncharacterized protein upf0065; Miscellaneous; hypothetical/global homology. (344 aa)    
Predicted Functional Partners:
RSc0793
Probable transmembrane protein.
 
  
 0.938
RSc0794
Probable transmembrane protein.
 
  
 0.937
RSp0119
Hypothetical of unknown function duf453; transmembrane protein.
 
    0.744
RSc3134
Putative msf transporter transmembrane protein.
  
     0.555
RSp0331
Putative transcription regulator protein.
 
   
 0.506
gltD
Probable glutamate synthase (small subunit) oxidoreductase protein.
       0.473
RSp0185
Putative transcription regulator protein.
 
     0.465
RSp0328
Probable transcription regulator protein.
 
     0.451
RSc2510
Probable trap-type c4-dicarboxylate transport system, periplasmic component signal peptide protein.
  
     0.450
RSc2961
Putative abc-type transport system involved in resistance to organic solvents, permease component abc transporter protein.
       0.428
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.