STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc2985Probable cytochrome c assembly; abc transporter protein. (395 aa)    
Predicted Functional Partners:
RSc2986
Probable cytochrome c biogenesis transmembrane protein.
 
  
 0.994
RSc0333
Putative thiol-disulfide isomerase or thioredoxin transmembrane protein.
 
  
 0.830
RSc2048
Probable transmembrane protein.
  
     0.775
RSc2356
Probable bifunctional: uroporphyrin-III c-methyltransferase and uroporphyrinogen-III synthase transmembrane protein.
 
  
 0.682
RSc0454
Putative fe-s oxidoreductase fad/fmn-containing dehyfrogenase oxidoreductase protein.
 
  
 0.665
hemA
Probable glutamyl-trna reductase oxidoreductase protein; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
 
  
 0.608
nirE
Putative uroporphyrinogen-III c-methyltransferase protein; Belongs to the precorrin methyltransferase family.
  
  
 0.561
RSc2987
Probable oxidoreductase cytochrome c-type signal peptide protein.
     
 0.561
hemB
Probable delta-aminolevulinic acid dehydratase protein; Belongs to the ALAD family.
  
  
 0.544
RSp0641
Probable non ribosomal peptide synthetase protein.
  
  
 0.543
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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