STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc2986Probable cytochrome c biogenesis transmembrane protein. (700 aa)    
Predicted Functional Partners:
RSc2985
Probable cytochrome c assembly; abc transporter protein.
 
  
 0.994
RSc0333
Putative thiol-disulfide isomerase or thioredoxin transmembrane protein.
 
  
 0.781
RSc2048
Probable transmembrane protein.
  
     0.775
RSc0454
Putative fe-s oxidoreductase fad/fmn-containing dehyfrogenase oxidoreductase protein.
  
     0.673
sdhE
Conserved hypothetical protein; An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH and other flavinylated proteins as well.
  
     0.627
RSc1557
Probable transmembrane protein.
  
     0.568
RSc2555
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.568
RSc2404
Hypothetical signal peptide protein.
  
     0.564
nirE
Putative uroporphyrinogen-III c-methyltransferase protein; Belongs to the precorrin methyltransferase family.
  
    0.555
RSc2987
Probable oxidoreductase cytochrome c-type signal peptide protein.
     
 0.548
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.