STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc3026Hypothetical sam (or some other nucleotide) binding motif protein. (196 aa)    
Predicted Functional Partners:
coq7
Probable ipr011566 ubiquinone biosynthesis and related protein; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.
   
 0.858
RSc3027
Probable signal peptide protein.
       0.741
RSc3030
Hypothetical precursor. signal peptide protein; Protects the bacterial cell from host peptidases.
       0.686
RSc3028
Putative signal peptide protein.
       0.685
RSc3029
Hypothetical signal peptide protein.
       0.685
ubiB
Probable ubiquinone biosynthesis ubib. transmembrane protein; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis.
   
 
 0.652
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.639
RSc3032
Probable transmembrane protein.
     
 0.581
RSc3031
Hypothetical protein of unknown function duf1175.
       0.572
recQ
Probable atp-dependent dna helicase protein.
 
     0.571
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.