STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc3030Hypothetical precursor. signal peptide protein; Protects the bacterial cell from host peptidases. (1582 aa)    
Predicted Functional Partners:
RSc3027
Probable signal peptide protein.
 
  
 0.978
RSc3028
Putative signal peptide protein.
 
  
 0.966
RSc3032
Probable transmembrane protein.
  
  
 0.905
RSc3031
Hypothetical protein of unknown function duf1175.
  
    0.866
RSc3029
Hypothetical signal peptide protein.
  
  
 0.857
RSc0787
Probable transmembrane protein.
  
    0.797
RSc0170
Probable transmembrane protein.
  
     0.773
RSp1620
Putative surface-exposed adhesin protein.
  
     0.769
RSp1536
Probable hemagglutinin-related signal peptide protein.
  
     0.741
RSc3183
Probable hemagglutinin-related signal peptide protein.
  
     0.740
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.