STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc3032Probable transmembrane protein. (631 aa)    
Predicted Functional Partners:
RSc3031
Hypothetical protein of unknown function duf1175.
  
  
 0.915
RSc3030
Hypothetical precursor. signal peptide protein; Protects the bacterial cell from host peptidases.
  
  
 0.905
RSc3027
Probable signal peptide protein.
  
  
 0.875
RSc3029
Hypothetical signal peptide protein.
  
  
 0.804
RSc3028
Putative signal peptide protein.
  
  
 0.791
RSc3026
Hypothetical sam (or some other nucleotide) binding motif protein.
     
 0.581
rpoC
Probable dna-directed rna polymerase (beta' chain) protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
       0.470
RSc0787
Probable transmembrane protein.
   
    0.469
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.