STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc3065Probable cog3713, mipa like outer membrane v transmembrane protein. (261 aa)    
Predicted Functional Partners:
RSc3063
Probable transmembrane sensor histidine kinase transcription regulator protein.
 
     0.689
RSc3390
Probable porin signal peptide protein.
  
     0.644
RSc0115
Probable hemagglutinin-related autotransporter protein.
  
     0.614
RSc3064
Probable response regulator transcription regulator protein.
 
     0.584
RSc3066
Hypothetical protein; Miscellaneous; unknown.
       0.518
waaL
Probable lipopolysaccharide o-antigen ligase transmembrane protein.
  
     0.480
dgoK
Probable 2-dehydro-3-deoxygalactonokinase protein.
  
     0.469
nfrB
Probable inner membrane transmembrane protein.
  
     0.411
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.