STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc3080Probable transcription regulator protein. (256 aa)    
Predicted Functional Partners:
RSp1030
Probable cog3687, predicted metal-dependent hydrolase protein.
 
     0.734
tadD2
Probable pilus assembly tadd transmembrane protein.
  
     0.694
cpaB2
Probable flp pilus assembly cpab; signal peptide protein.
  
     0.690
RSc2120
Putative predicted xylanase/chitin deacetylase protein.
 
      0.668
tadG2
Putative cog4961, flp pilus assembly transmembrane protein.
  
    0.566
RSp1080
Probable transmembrane protein.
  
     0.544
RSc3081
Putative lipoprotein.
       0.531
RSc3082
Probable pseudogene (c-terminal fragment) protein.
       0.531
RSp0926
Putative outer membrane cation efflux protein.
  
     0.509
RSc1297
Probable pseudogene (sterol desaturase fragment) transmembrane protein.
  
     0.494
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.