STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc3084Probable transmembrane protein. (294 aa)    
Predicted Functional Partners:
petC
Putative cytochrome c1 precursor transmembrane protein.
 
  
 0.767
RSc2987
Probable oxidoreductase cytochrome c-type signal peptide protein.
 
   
 0.741
RSc1557
Probable transmembrane protein.
  
     0.727
RSc1000
Putative periplasmic cytochrome type-c oxidoreductase signal peptide protein.
 
   
 0.661
RSc0370
Probable transmembrane protein.
 
     0.654
RSc2048
Probable transmembrane protein.
  
     0.632
RSc2081
Probable transmembrane protein.
  
     0.605
ctaA
Putative heme o oxygenase (cytochrome aa3-controlling) transmembrane protein.
 
     0.593
coxB
Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
  
 0.578
RSc0197
Putative cytochrome c signal peptide protein.
 
   
 0.567
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.