STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc3088Putative signal peptide protein. (317 aa)    
Predicted Functional Partners:
RSc0793
Probable transmembrane protein.
 
  
 0.948
RSc0794
Probable transmembrane protein.
 
  
 0.944
RSc3134
Putative msf transporter transmembrane protein.
  
     0.556
RSp0119
Hypothetical of unknown function duf453; transmembrane protein.
 
  
 0.527
RSc3411
Probable transcription regulator protein.
 
  
 0.438
RSc2510
Probable trap-type c4-dicarboxylate transport system, periplasmic component signal peptide protein.
  
     0.429
tISRso11b-4
Isrso11-transposase orfb protein.
  
    0.426
tISRso11a-4
Isrso11-transposase orfa protein.
  
    0.426
RSp0185
Putative transcription regulator protein.
 
     0.422
RSp0331
Putative transcription regulator protein.
 
   
 0.421
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.