STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc3094Conserved hypothetical protein; Miscellaneous; hypothetical/global homology. (264 aa)    
Predicted Functional Partners:
repA
Probable repa replicase protein.
  
     0.734
soxA1
Probable sarcosine oxidase (alpha subunit) oxidoreductase protein; Belongs to the GcvT family.
      
 0.720
RSp0116
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.718
RSp0309
Putative transcription regulator protein.
  
   
 0.714
RSc1397
Probable transmembrane protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.
  
     0.704
tISRso18-2
Isrso18-transposase protein.
      
 0.678
rseA
Putative transmembrane sigma-e factor negative regulatory transcription regulator protein.
  
     0.677
RSp1574
Putative transcriptional regulator transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
      
 0.675
parB
Putative partitioning protein; Belongs to the ParB family.
  
     0.665
RSc0317
Probable transmembrane protein.
  
     0.652
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.