STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc3097Probable nad(p)h dehydrogenase (quinone); oxidoreductase protein. (182 aa)    
Predicted Functional Partners:
kefC
Probable glutathione-regulated potassium-efflux system transmembrane protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
 
 
 0.979
RSc0414
Putative glutathione-regulated potassium-efflux system k+/h+ antiporter transmembrane protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
 
 
 0.870
RSc2329
Putative nad(p)h dehydrogenase (quinone); protein.
 
   
 0.481
lysA
Probable diaminopimelate decarboxylase protein; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
  0.438
ssd
Probable staphyloferrin b siderophore synthesis decarboxylase protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
    
  0.438
RSp0679
Putative orn/dap/arg decarboxylase 2; protein.
    
  0.438
RSc0710
Putative aminotransferase protein.
   
    0.416
aspC
Probable aspartate aminotransferase protein.
   
    0.416
RSc1326
Probable aspartate aminotransferase protein.
   
    0.416
dapC
Probable succinyldiaminopimelate aminotransferase protein.
   
    0.416
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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