STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sbcBPutative exodeoxyribonucleaseIprotein. (489 aa)    
Predicted Functional Partners:
carB
Probable carbamoyl-phosphate synthase large chain (carbamoyl-phosphate synthetase ammonia chain) protein.
      
 0.835
hslV
Probable atp-dependent protease hslv protein; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.
      
 0.760
eutC
Putative ethanolamine ammonia-lyase light chain (ethanolamineammonia-lyase small subunit) protein; Belongs to the EutC family.
       0.693
eutB
Putative ethanolamine ammonia-lyase heavy chain protein.
       0.693
ssb
Probable single-strand binding protein (ssb) (helix-destabilizing protein); Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
    
 
 0.663
murJ
Probable transmembrane protein; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.
     
 0.632
dusB
Putative trna-dihydrouridine synthase protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily.
      
 0.620
pilP
Probable fimbrial type-4 assembly lipoprotein.
  
     0.540
RSc0718
Putative type 4 fimbrial biogenesis pily1-related protein transmembrane.
  
     0.526
recJ
Probable single-stranded-dna-specific exonuclease protein.
    
 
 0.524
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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