STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sbcBPutative exodeoxyribonucleaseIprotein. (489 aa)    
Predicted Functional Partners:
eutC
Putative ethanolamine ammonia-lyase light chain (ethanolamineammonia-lyase small subunit) protein; Belongs to the EutC family.
       0.693
eutB
Putative ethanolamine ammonia-lyase heavy chain protein.
       0.693
ssb
Probable single-strand binding protein (ssb) (helix-destabilizing protein); Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
    
 
 0.660
pilP
Probable fimbrial type-4 assembly lipoprotein.
  
     0.540
RSc0718
Putative type 4 fimbrial biogenesis pily1-related protein transmembrane.
  
     0.526
exaC
Putative nad+ dependent acetaldehyde dehydrogenase oxidoreductase protein; Belongs to the aldehyde dehydrogenase family.
       0.499
recJ
Probable single-stranded-dna-specific exonuclease protein.
    
 
 0.473
RSp0110
Hypothetical of unknown function duf58; transmembrane protein.
  
     0.470
RSp1288
Putative type-4 fimbrial biogenesis pily1-related protein.
  
     0.468
RSc1062
Probable transmembrane protein.
  
     0.463
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.