STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc3135Hypothetical ferritin/ribonucleotide reductase-like; protein. (284 aa)    
Predicted Functional Partners:
RSp0200
Probable aminotransferase class-III; oxidoreductase protein.
   
 
 0.618
RSc0559
Putative lipida core-o-antigen ligase transmembrane protein.
  
     0.503
RSc3134
Putative msf transporter transmembrane protein.
       0.463
RSc0432
Putative amp-dependent synthetase or ligase protein.
  
   
 0.460
RSc0425
Putative cog4706, 3-hydroxylacyl-(acyl carrier protein) dehydratase.
  
     0.448
RSc0972
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.443
RSp1481
Probable transmembrane protein.
  
     0.443
RSc3269
Hypothetical transmembrane protein.
  
     0.430
RSc1236
Probable outer membrane protein (porin).
  
     0.426
nagAa
Probable ferredoxin oxidoreductase oxidoreductase protein.
  
 
 0.402
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.