STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc3140Putative serine protease protein. (305 aa)    
Predicted Functional Partners:
rseA
Putative transmembrane sigma-e factor negative regulatory transcription regulator protein.
  
 
 0.701
glpK
Probable glycerol kinase (atp:glycerol 3-phosphotransferase)(glycerokinase) (gk) protein; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
 0.609
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.602
RSc1806
Probable polyketide synthase protein.
  
 0.554
pnp
Probable polyribonucleotide nucleotidyltransferase protein; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
  
 0.543
RSc3141
Putative lipoprotein transmembrane.
       0.511
katE
Probable catalase hydroperoxidase hpII oxidoreductase protein; Belongs to the catalase family.
   
 0.485
RSc0414
Putative glutathione-regulated potassium-efflux system k+/h+ antiporter transmembrane protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
 
   
 0.447
kefC
Probable glutathione-regulated potassium-efflux system transmembrane protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
 
   
 0.442
rplT
Probable 550s ribosomal protein l20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
   0.438
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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