Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RSc3162Probable hemagglutinin-related autotransporter protein. (1012 aa)    
Predicted Functional Partners:
RSc3165
Putative esterase/lipase/thioesterase; transmembrane protein.
 
     0.877
RSp0244
Probable outer membrane hemin receptor signal peptide protein.
  
   
 0.622
RSc3164
Putative glycosyl transferase, family 9; protein.
 
     0.592
RSc1462
Putative nucleoside-diphosphate-sugar epimerase signal peptide protein.
  
     0.554
RSp1574
Putative transcriptional regulator transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.553
RSc3161
Probable two component response regulator transcription regulator protein.
  
  
 0.525
RSc0595
Probable outer membrane receptor signal peptide protein.
  
 
 
 0.499
RSp0674
Probable lipoprotein.
  
     0.488
RSp1498
Probable outer membrane usher signal peptide protein.
  
    0.484
RSp0600
Conserved hypothetical protein 2246; Miscellaneous; hypothetical/global homology.
  
     0.471
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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