STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tISRso1-3Transposase protein. (274 aa)    
Predicted Functional Partners:
tISRso18-2
Isrso18-transposase protein.
      
 0.643
RSc3094
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
      
 0.629
soxA1
Probable sarcosine oxidase (alpha subunit) oxidoreductase protein; Belongs to the GcvT family.
      
 0.629
RSp1574
Putative transcriptional regulator transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
      
 0.620
RSp1137
Putative rhs-related transmembrane protein.
      
 0.618
RSp0309
Putative transcription regulator protein.
      
 0.616
RSc3198
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
       0.558
RSc3200
Probable pseudogene (dehydrogenase, fragment) protein.
       0.422
RSc3201
Probable pseudogene (dehydrogenase, fragment) protein.
       0.402
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.