STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc3201Probable pseudogene (dehydrogenase, fragment) protein. (179 aa)    
Predicted Functional Partners:
RSc3200
Probable pseudogene (dehydrogenase, fragment) protein.
     0.975
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.749
hisB
Probable imidazoleglycerol-phosphate dehydratase (igpd). oxidoreductase protein.
 
      0.687
RSp1422
Putative peptide synthetase protein.
  
 
 0.613
RSp0589
Probable dehydrogenase/reductase oxidoreductase protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.581
RSp1123
Probable kog1208, dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) oxidoreductase protein.
  
     0.577
RSp0697
Probable dehydrogenase/reductase oxidoreductase protein.
  
     0.506
idnO
Probable gluconate 5-dehydrogenase oxidoreductase protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.434
RSc1769
Probable oxidoreductase dehydrogenase signal peptide protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.433
RSc2753
Probable ipr002198 short-chain dehydrogenase/reductase oxidoreductase protein.
  
     0.409
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.