STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc3207Putative transcription regulator protein. (204 aa)    
Predicted Functional Partners:
RSc3206
Probable transport lipoprotein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.893
RSc3205
Probable transmembrane drug efflux protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
     0.889
RSc3208
Putative drug efflux lipoprotein.
 
     0.872
RSc3209
Putative short-chain dehydrogenase/reductase sdr; oxidoreductase protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.798
RSp1208
Probable signal transduction protein eal-ggdef domains.
    
 
 0.654
RSp0224
Probable transcription regulator protein.
      
 0.638
RSp1579
Putative transcription regulator protein.
      
 0.638
relA
Probable gtp pyrophosphokinase (atp:gtp 3'-pyrophosphotransferase) protein; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
      
 0.463
flgN
Probable flagella synthesis protein flgn.
      
 0.431
RSc2213
Putative transcription regulator transcription regulator protein.
  
     0.416
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.