STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc3217Conserved hypothetical protein; Miscellaneous; hypothetical/global homology. (90 aa)    
Predicted Functional Partners:
RSc3220
Putative vgr-related protein.
 
     0.945
RSp0739
Probable transmembrane protein.
 
  
 0.788
RSp0518
Putative vgr-related protein.
 
   
 0.787
RSp0740
Hypothetical protein of unknown function duf876, bacterial.
 
  
 0.779
RSp0763
Probable transmembrane protein.
 
   
 0.775
RSp0629
Putative vgr-related protein.
 
   
 0.774
RSc3216
Miscellaneous; hypothetical/partial homology.
       0.773
RSc3218
Hypothetical virulence factor, pectin lyase fold; transmembrane protein.
       0.773
RSc3219
Putative transmembrane protein.
       0.773
RSp0741
Putative transmembrane protein.
 
  
 0.772
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.