Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc3220Putative vgr-related protein. (509 aa)    
Predicted Functional Partners:
RSc3222
Putative vgr-related protein.
 
     0.976
RSc3217
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
     0.945
RSp0740
Hypothetical protein of unknown function duf876, bacterial.
 
  
 0.836
RSp0743
Hypothetical uncharacterised conserved protein ucp028301.
 
  
 0.815
RSp0745
Hypothetical protein of unknown function duf796.
 
  
 0.815
RSp0747
Hypothetical protein of unknown function duf879, bacterial.
 
  
 0.814
RSp0744
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
  
 0.812
RSp0748
Hypothetical protein of unknown function duf1305.
 
  
 0.812
RSp0763
Probable transmembrane protein.
 
  
 0.812
RSp0739
Probable transmembrane protein.
 
  
 0.802
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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