STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc3224Conserved hypothetical protein; Miscellaneous; hypothetical/global homology. (99 aa)    
Predicted Functional Partners:
RSc3225
Hypothetical protein of unknown function upf0156.
 
 
 0.994
putA
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
  
 
 0.874
RSc1432
Probable transcription regulator protein.
  
 
 0.869
RSc2585
Hypothetical ribbon-helix-helix harboring protein.
  
 
 0.708
RSc3226
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
       0.608
RSc3227
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
       0.608
RSc3228
Putative bacteriophage-related protein.
       0.608
vapC
Putative plasmid stability-like protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
 
     0.494
RSc3231
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
     0.464
RSc0872
Hypothetical protein of unknown function duf172; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
     0.456
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.