STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc3252Putative peptidase m, neutral zinc metallopeptidases, zinc-binding site; protein. (376 aa)    
Predicted Functional Partners:
RSc3251
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
    0.955
pilA
Type 4 fimbrial pilin signal peptide protein; Belongs to the N-Me-Phe pilin family.
      
 0.645
RSc3437
Putative galactose mutarotase-like protein.
      
 0.645
vsr
Probable patch repair protein (dna mismatch endonuclease); May nick specific sequences that contain T:G mispairs resulting from m5C-deamination.
      
 0.618
mexC
Probable multidrug efflux system protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
      
 0.616
brg11
Probable avrbs3 family type III effector protein; Exported into plant cells, where it is targeted to the nucleus and probably acts as a transcription factor. Binds DNA in a sequence-specific manner. May contribute to plant pathogenicity. Belongs to the transcription activator-like effector (TALE) family. RipTAL/RTL subfamily.
     
 0.537
lpxC
UDP-3-O-acyl-N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.
      
 0.532
RSc1120
Hypothetical transmembrane protein.
  
  
 0.502
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.