STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc3254Putative thioredoxin fold harboring signal peptide protein. (172 aa)    
Predicted Functional Partners:
RSc3256
Putative cytochrome c-related protein.
 
 
 0.835
RSc3255
Putative cytochrome c transmembrane protein.
 
 
   0.831
RSc2287
Putative thiol-disulfide isomerase and thioredoxins protein.
 
   
 0.786
RSc3257
Hypothetical signal peptide protein.
 
     0.784
msrA
Putative peptide methionine sulfoxide reductase oxidoreductase protein; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
   
 0.780
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.776
RSc3253
Probable sulfur oxidation signal peptide protein; Belongs to the 5'-nucleotidase family.
       0.775
dsbD
Thiol:disulfide interchange protein DsbD; Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps (By similarity); Belongs to the thioredoxin family. DsbD subfamily.
  
 
 0.760
RSc3258
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
     0.755
RSc3259
Hypothetical transmembrane protein.
 
     0.720
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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