STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc3265Hypothetical protein; Macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif; Belongs to the UPF0102 family. (130 aa)    
Predicted Functional Partners:
RSc0338
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
  
 0.787
RSc0359
Putative competence protein f-related protein.
 
    0.743
RSc3264
Putative periplasmic or secreted lipoprotein signal peptide.
       0.729
smf
Putative smf protein (predicted rossmann fold nucleotide-binding protein involved in dna uptake).
 
  
 0.693
rsmI
Probable of unknown function upf0011; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.602
RSc1367
Hypothetical transmembrane protein.
 
     0.503
RSp0254
Probable signal transduction eal-ggdef domains transmembrane protein.
   
    0.452
RSc3263
Putative cytochrome c signal peptide protein.
   
   0.439
RSc0510
Probable signal transduction eal-ggdef domains transmembrane protein.
   
    0.409
RSp0813
Putative signal transduction eal-ggdef domains transmembrane protein.
   
    0.409
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.