STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alcProbable allantoicase (allantoate amidinohydrolase) protein; Belongs to the allantoicase family. (336 aa)    
Predicted Functional Partners:
RSc2120
Putative predicted xylanase/chitin deacetylase protein.
 
  0.970
ureB
Probable urease (beta subunit) protein; Belongs to the urease beta subunit family.
 
  
  0.918
ureC
Probable urease (alpha subunit) protein; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.
    
  0.907
ureA
Probable urease gamma subunit (urea amidohydrolase gamma subunit) protein; Belongs to the urease gamma subunit family.
    
  0.907
RSc2121
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
  
 0.646
RSc2116
Hypothetical transthyretin-like protein; Catalyzes the hydrolysis of 5-hydroxyisourate (HIU) to 2-oxo- 4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU); Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
  
 0.633
RSc0456
Probable atp-binding transport abc transporter protein.
   
 
 0.570
RSp0240
Putative glycosidase possibly involved in trehalose metabolism protein.
 
 
    0.553
RSc1961
Putative aaa atpase; protein.
   
 
 0.478
RSc2115
Probable transmembrane protein.
 
    0.478
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.