STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hemNProbable oxygen-independent coproporphyrinogen III oxidase oxidoreductase protein; Belongs to the anaerobic coproporphyrinogen-III oxidase family. (510 aa)    
Predicted Functional Partners:
hemF
Oxygen-dependent coproporphyrinogen-III oxidase; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.
    
 0.978
hemE
Probable uroporphyrinogen decarboxylase (uro-d) (upd) protein; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
 
 
 0.968
RSc2740
Probable transmembrane protein.
 
  
 0.930
RSc1280
Probable iron-sulfur 4fe-4s ferredoxin transmembrane protein.
 
  
 0.826
RSc1276
Probable cytochrome c oxidase (subunitI transmembrane protein; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.819
RSc1277
Probable cytochrome c oxidase (subunit II) transmembrane protein.
 
  
 0.793
RSp0993
Probable cytochrome c oxidase subunit transmembrane protein.
 
  
 0.792
RSp0992
Probable signal peptide protein.
 
  
 0.778
RSc2967
Probable outer membrane w-related protein signal peptide.
 
  
 0.771
ompW
Putative outer membrane w signal peptide protein.
 
  
 0.758
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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