STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
solRTranscriptional activator solr. transcription regulator protein; Belongs to the autoinducer-regulated transcriptional regulatory protein family. (236 aa)    
Predicted Functional Partners:
solI
Autoinducer synthesis protein soli; Required for the synthesis of acyl-HSL autoinducers that bind to SolR.
 
 
 0.985
RSp0779
Probable autoinducer synthase (acyl homoserine lactone synthase) protein.
 
 
 0.978
rcsC
Probable capsular synthesis regulatory (two-component sensor kinase and response regulator hybrid) transcription regulator protein.
  
 
 0.723
vsrA
Transmembrane sensor kinase vsra transcription regulator protein.
 
 
 0.607
RSc0191
Probable transmembrane two component system sensor kinase transcription regulator protein.
 
 
 0.538
aac
Probable acyl-homoserine lactone acylase transmembrane protein.
      
 0.534
phcA
HTH-type transcriptional regulator PhcA; Regulates the transcription of one or more of the genes involved in virulence.
   
  
 0.533
RSc1895
Putative transcription regulator protein.
  
     0.532
RSp0323
Putative type III effector protein.
      
 0.528
vsrC
Response regulator vsrc transcription regulator protein.
  
   
 0.494
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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