STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc3288Probable sugar-binding lectin protein. (114 aa)    
Predicted Functional Partners:
RSc1081
Probable glucosidase protein; Belongs to the glycosyl hydrolase 31 family.
    
  0.620
RSc1097
Probable transcription regulator protein.
      
 0.574
RSc3149
Putative transcription regulator protein.
      
 0.574
RSc0403
Conserved hypothetical protein; Displays ATPase and GTPase activities.
     
 0.550
pme
Pectinesterase precursor (pectin methylesterase) (pe). transmembrane protein; Involved in maceration and soft-rotting of plant tissue. Belongs to the pectinesterase family.
     
 0.550
RSc0368
Probable transmembrane protein.
      
 0.549
RSp0272
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
      
 0.549
rep
Probable atp-dependent dna helicase rep protein; Rep helicase is a single-stranded DNA-dependent ATPase involved in DNA replication; it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction.
       0.402
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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