STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc3331Putative short-chain dehydrogenase/reductase sdr; protein. (201 aa)    
Predicted Functional Partners:
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.749
RSp1422
Putative peptide synthetase protein.
  
 
 0.613
RSc3330
Hypothetical signal peptide protein.
       0.596
RSp1428
Probable thiosulfate sulfurtransferase; protein.
  
 
   0.561
RSc3332
Probable transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
       0.542
scrA
Probable pts system, sucrose-specific (IIbc component) transmembrane protein.
  
   
 0.500
RSc3329
Probable amino-acid-binding periplasmic (pbp) abc transporter protein.
   
   0.416
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.