STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
betAPutative choline dehydrogenase lipoprotein oxidoreductase. (544 aa)    
Predicted Functional Partners:
RSc3346
Putative lysophospholipase protein.
     
 0.597
RSc0770
Putative transmembrane dehydrogenase (small subunit) oxidoreductase protein.
   
   0.490
RSc3347
Probable transcription regulator protein.
  
  
 0.476
RSp0641
Probable non ribosomal peptide synthetase protein.
     
 0.474
RSc3348
Probable cation-transporting atpase transmembrane protein.
       0.465
RSc3344
Probable atp-binding abc transporter protein.
  
    0.438
RSc3163
Probable tpr domain protein.
  
 
  0.430
RSp0097
Probable ankyrin-repeat harboring protein.
  
 
 0.429
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.