STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
copZProbable copper ion-binding protein. (66 aa)    
Predicted Functional Partners:
sodC
Probable superoxide dismutase cu-zn precursor protein; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
   
 0.948
RSc3348
Probable cation-transporting atpase transmembrane protein.
 
 
 0.942
RSc1274
Probable cation-transporting atpase lipoprotein transmembrane.
  
 
 0.869
RSp0319
Probable metal-transporting p-type atpase transmembrane protein.
  
 
 0.862
RSc3347
Probable transcription regulator protein.
 
  
 0.804
RSp0320
Probable transcription regulator protein.
 
  
 0.532
tyrB
Probable aromatic-amino-acid aminotransferase protein.
   
   0.509
dps
Putative dna protection during starvation or oxydative stress transcription regulator protein; Belongs to the Dps family.
  
  
 0.503
ppiB
Probable peptidyl-prolyl cis-trans isomerase b (ppiase b) (rotamase b)(cypb protein); PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
   0.501
ppiA
Probable peptidyl-prolyl cis-trans isomerase a (ppiase a)(rotamase a)(cyph) signal peptide protein; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
   0.501
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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