STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ompWPutative outer membrane w signal peptide protein. (241 aa)    
Predicted Functional Partners:
hemN
Probable oxygen-independent coproporphyrinogen III oxidase oxidoreductase protein; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.775
RSc1277
Probable cytochrome c oxidase (subunit II) transmembrane protein.
 
    0.693
RSp0992
Probable signal peptide protein.
 
    0.678
bamE
Putative ipr007450 small a (tmrna-binding)-related protein transmembrane; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
   
 0.655
RSc1280
Probable iron-sulfur 4fe-4s ferredoxin transmembrane protein.
 
  
 0.649
RSc1276
Probable cytochrome c oxidase (subunitI transmembrane protein; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.595
RSc1279
Probable cytochrome c oxidase (subunit III) transmembrane protein; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
    0.579
RSc0138
Hypothetical protein of unknown function duf344.
   
    0.576
RSp0993
Probable cytochrome c oxidase subunit transmembrane protein.
 
  
 0.576
tISRso1-5
Transposase protein.
       0.566
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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