STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc3352Putative ornithine cyclodeaminase protein. (334 aa)    
Predicted Functional Partners:
putA
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
  
 
 0.942
RSc0158
Probable arginase protein; Belongs to the arginase family.
 
 
 0.934
RSp0483
Probable ornithine cyclodeaminase protein.
  
  
 
0.928
proC
Probable oxidoreductase pyrroline-5-carboxylate reductase signal peptide protein; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
   
 
 0.914
RSc0159
Probable acetylornithine aminotransferase protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
 
 0.903
RSc2814
Putative prolyl 4-hydroxylase alpha subunit homologue oxidoreductase protein.
     
  0.900
RSp0196
Probable prolyl aminopeptidase protein; Belongs to the peptidase S33 family.
     
  0.900
RSp0418
Probable ornithine cyclodeaminase protein.
  
     0.772
RSc3353
Probable transmembrane protein.
       0.661
RSc3354
Probable transcription regulator protein.
       0.495
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.