STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpdBProbable 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor transmembrane protein; Belongs to the 5'-nucleotidase family. (681 aa)    
Predicted Functional Partners:
RSc2548
Putative inosine-uridine preferring nucleoside hydrolase transmembrane protein.
 
 
  0.930
surE
Probable 5'-nucleotidase sure (nucleoside 5'-monophosphatephosphohydrolase) protein; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
     
 0.913
RSc2791
Probable carbohydrate kinase, pfkb protein.
    
 0.905
ppnP
Conserved hypothetical protein; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions.
     
  0.900
RSc3362
Putative tetratricopeptide repeat-like protein.
  
  
 0.762
RSc3258
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
   
 
 0.706
RSc3259
Hypothetical transmembrane protein.
   
 
 0.706
RSc3253
Probable sulfur oxidation signal peptide protein; Belongs to the 5'-nucleotidase family.
  
0.483
RSp0720
Probable signal peptide protein.
 
     0.447
RSp0719
Hypothetical signal peptide protein.
 
     0.426
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.